species:   Scscl
pid:       PID1746
parent:    Ssc-milR-222
paralog:   
locus:     NW_001820835.1:2686146-2686224
matures:   ['UUGUAUAGAGCUUCGUGCUCAAA', 'GCAUGAAGGUCUAUAUAACC']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820835.1:2686146-2686224

0 out of bounds
6 alignments
1 proper strand
1 stranded perfect matches

          **********************            *************************          
AGGGGACGAUUAGCAUGAAGGUCUAUAUAACCAAGAUGGAUUUCCUUUGUAUAGAGCUUCGUGCUCAAAAUCAACCAUU
...((..(((((((((((((.((((((((((((...))).......))))))))).)))))))))...))))..))...
----------------------------------------------UUGUAUAGAGCUUCGUGCUCAAA---------- l=23 a=1 c
------------GCAUGAAGGUCUAUAUAACC----------------------------------------------- l=20 a=0 c*
----------------------------------------------UUGUAUAGAGCUUCGUGCUCAAA---------- l=23 a=1 ma
------------GCAUGAAGGUCUAUAUAACC----------------------------------------------- l=20 a=0 ma*

----------------------------------------------UUGUAUAGAGCUUCGUGCUCAAA---------- l=23 a=1 (c,ma)

mb-00011
ax-1011011
ku-01
ss-110111011000
fn-101
